Recent Publications
Optimizing fungicide timing for the management of white mold in processing snap bean in New York
Pethybridge, S. J., Gugino, B. K. & Kikkert, J. R., Nov 1 2019, In : Crop Protection. 125, 104883.Research output: Contribution to journal › Article
Corrigendum: Inference of convergent gene acquisition among pseudomonas syringae strains isolated from watermelon, cantaloupe, and squash (Frontiers in Microbiology (2019) 10 (270) DOI: 10.3389/fmicb.2019.00270)
Newberry, E. A., Ebrahim, M., Timilsina, S., Zlatković, N., Obradoví, A., Bull, C. T., Goss, E. M., Huguet-Tapia, J. C., Paret, M. L., Jones, J. B. & Potnis, N., Jan 1 2019, In : Frontiers in Microbiology. 10, MAY, 00963.Research output: Contribution to journal › Comment/debate
Efficacy of Double Nickel LC (Bacillus amyloliquefaciens D747 strain) for management of white mold in snap and dry bean
Pethybridge, S. J., Gugino, B. K. & Kikkert, J. R., Jan 1 2019, In : Plant Health Progress. 20, 1, p. 61-66 6 p.Research output: Contribution to journal › Article
Determinants of coinfection in the mycoviruses
Thapa, V. & Roossinck, M. J., Jan 1 2019, In : Frontiers in Cellular and Infection Microbiology. 9, MAY, 169.Research output: Contribution to journal › Comment/debate
Disruption and Overexpression of the Gene Encoding ACC (1-Aminocyclopropane-1-Carboxylic Acid) Deaminase in Soil-Borne Fungal Pathogen Verticillium dahliae Revealed the Role of ACC as a Potential Regulator of Virulence and Plant Defense
Tsolakidou, M. D., Pantelides, L. S., Tzima, A. K., Kang, S., Paplomatas, E. J. & Tsaltas, D., Jun 1 2019, In : Molecular Plant-Microbe Interactions. 32, 6, p. 639-653 15 p.Research output: Contribution to journal › Article
Impact of Ammonia During Composting on Calonectria pseudonaviculata and C. henricotiae, Causal Agents of Boxwood Blight
Harvey, R. J., Shishkoff, N., Pecchia, J. A. & Davis, D. D., Apr 3 2019, In : Compost Science and Utilization. 27, 2, p. 116-123 8 p.Research output: Contribution to journal › Article
Unraveling the ecology and epidemiology of an emerging fungal disease, sea turtle egg fusariosis (STEF)
Smyth, C. W., Sarmiento-Ramírez, J. M., Short, D. P. G., Diéguez-Uribeondoid, J., O’donnell, K. & Geiser, D. M., May 1 2019, In : PLoS pathogens. 15, 5, e1007682.Research output: Contribution to journal › Article
Host-specific symptoms and increased release of Xanthomonas citri and X.campestris pv. malvacearum from leaves are determined by the 102-bp tandem repeats of pthA and avrb6, respectively
Yang, Y., De Feyter, R. & Gabriel, D. W., Jan 1 1994, In : Molecular Plant-Microbe Interactions. 7, 3, p. 345-355 11 p.Research output: Contribution to journal › Article
Xanthomonas avirulence/pathogenicity gene family encodes functional plant nuclear targeting signals
Yang, Y. & Gabriel, D. W., Jul 1 1995, In : Molecular Plant-Microbe Interactions. 8, 4, p. 627-631 5 p.Research output: Contribution to journal › Article
The Bax inhibitor UvBI-1, a negative regulator of mycelial growth and conidiation, mediates stress response and is critical for pathogenicity of the rice false smut fungus Ustilaginoidea virens
Xie, S., Wang, Y., Wei, W., Li, C., Liu, Y., Qu, J., Meng, Q., Lin, Y., Yin, W., Yang, Y. & Luo, C., Jan 1 2019, In : Current Genetics.Research output: Contribution to journal › Article
Extragenic suppression of elongation factor P gene mutant phenotypes in erwinia amylovora
Klee, S. M., Sinn, J. P., Holmes, A. C., Lehman, B. L., Krawczyk, T., Peter, K. A. & McNellis, T. W., Jan 1 2019, In : Journal of bacteriology. 201, 11, e0072218.Research output: Contribution to journal › Article
Inference of convergent gene acquisition among Pseudomonas syringae strains isolated from watermelon, cantaloupe, and squash
Newberry, E. A., Ebrahim, M., Timilsina, S., Zlatković, N., Obradović, A., Bull, C. T., Goss, E. M., Huguet-Tapia, J. C., Paret, M. L., Jones, J. B. & Potnis, N., Jan 1 2019, In : Frontiers in Microbiology. 10, FEB, 270.Research output: Contribution to journal › Article
The apple fruitlet model system for fire blight disease
Klee, S. M., Sinn, J. P. & McNellis, T. W., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 187-198 12 p. (Methods in Molecular Biology; vol. 1991).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Manipulation of aphid behavior by a persistent plant virus
Safari, M., Ferrari, M. J. & Roossinck, M. J., May 1 2019, In : Journal of virology. 93, 9, e01781-18.Research output: Contribution to journal › Article
Characterization of early blight resistance in potato cultivars
Xue, W., Haynes, K. G. & Qu, X., Apr 1 2019, In : Plant disease. 103, 4, p. 629-637 9 p.Research output: Contribution to journal › Article
In Memoriam: The Career, Achievements, and Legacy of Milton Zaitlin
Palukaitis, P. & Roossinck, M. J., Jan 1 2018, Advances in Virus Research. Palukaitis, P. & Roossinck, M. J. (eds.). Academic Press Inc., p. 1-21 21 p. (Advances in Virus Research; vol. 102).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities
Bell, T. H., Hockett, K., Alcalá-Briseño, R. I., Barbercheck, M., Beattie, G. A., Bruns, M. A., Carlson, J., Chung, T., Collins, A., Emmett, B., Esker, P., Garrett, K., Glenna, L., Gugino, B. K., Jimenez Gasco, M. D. M., Kinkel, L., Kovac, J., Kowalski, K., Kuldau, G., Leveau, J. & 10 others, , Mar 13 2019, In : Phytobiomes Journal.Research output: Contribution to journal › Article
Medicago sativa has Reduced Biomass and Nodulation When Grown with Soil Microbiomes Conditioned to High Phosphorus Inputs
Kaminsky, L. M., Thompson, G. L., Trexler, R. V., Bell, T. H. & Kao-Kniffin, J., Aug 30 2018, In : Phytobiomes Journal. 2, 4, p. 237-248 12 p.Research output: Contribution to journal › Article
CRISPR/Cas-Mediated Base Editing: Technical Considerations and Practical Applications
Molla, K. A. & Yang, Y., Jan 1 2019, In : Trends in Biotechnology.Research output: Contribution to journal › Review article
Molecular and genetic basis of plant-fungal pathogen interactions
Kang, S. & Dobinson, K. F., Jan 1 2004, Applied Mycology and Biotechnology. C ed. Elsevier, p. 59-97 39 p. (Applied Mycology and Biotechnology; vol. 4, no. C).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Impact of cultivated hosts on the recombination of cucumber mosaic virus
Ouedraogo, R. S., Pita, J. S., Somda, I. P., Traore, O. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 7, e01770.Research output: Contribution to journal › Article
Genetic diversity and geographic distribution of Bemisia tabaci and Trialeurodes vaporariorum in Costa Rica
Barboza, N. M., Esker, P., Inoue-Nagata, A. K. & Moriones, E., Mar 1 2019, In : Annals of Applied Biology. 174, 2, p. 248-261 14 p.Research output: Contribution to journal › Article
The past, present, and future of barley yellow dwarf management
Walls, J., Rajotte, E. G. & Rosa, C., Jan 1 2019, In : Agriculture (Switzerland). 9, 1, 23.Research output: Contribution to journal › Review article
Request for revision of the statutes of the international committee on systematics of prokaryotes
Whitman, W. B., Bull, C. T., Busse, H. J., Fournier, P. E., Oren, A. & Ventura, S., Feb 1 2019, In : International journal of systematic and evolutionary microbiology. 69, 2, p. 584-593 10 p., 003117.Research output: Contribution to journal › Article
The global burden of pathogens and pests on major food crops
Savary, S., Willocquet, L., Pethybridge, S. J., Esker, P., McRoberts, N. & Nelson, A., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 430-439 10 p.Research output: Contribution to journal › Article
Baseline sensitivity of penicillium spp. To difenoconazole
Jurick, W. M., Macarisin, O., Gaskins, V. L., Janisiewicz, W. J., Peter, K. A. & Cox, K. D., Feb 1 2019, In : Plant disease. 103, 2, p. 331-337 7 p.Research output: Contribution to journal › Article
Molecular systematics of two sister clades, the Fusarium concolor and F. babinda species complexes, and the discovery of a novel microcycle macroconidium–producing species from South Africa
Jacobs-Venter, A., Laraba, I., Geiser, D. M., Busman, M., Vaughan, M. M., Proctor, R. H., McCormick, S. P. & O’Donnell, K., Nov 2 2018, In : Mycologia. 110, 6, p. 1189-1204 16 p.Research output: Contribution to journal › Article
Genome sequence of a lethal vascular wilt fungus, verticillium nonalfalfae, a biological control used against the invasive ailanthus altissima
Kasson, M. T., Kasson, L. R., Wickert, K. L., Davis, D. D. & Stajich, J. E., Jan 24 2019, In : Microbiology Resource Announcements. 8, 4, e01619-18.Research output: Contribution to journal › Article
Marasas et al. 1984 “Toxigenic Fusarium Species: Identity and Mycotoxicology” revisited
O’Donnell, K., McCormick, S. P., Busman, M., Proctor, R. H., Ward, T. J., Doehring, G., Geiser, D. M., Alberts, J. F. & Rheeder, J. P., Nov 2 2018, In : Mycologia. 110, 6, p. 1058-1080 23 p.Research output: Contribution to journal › Article
A multiplexed CRISPR/cas9 editing system based on the endogenous tRNA processing
Xie, K. & Yang, Y., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 63-73 11 p. (Methods in Molecular Biology; vol. 1917).Research output: Chapter in Book/Report/Conference proceeding › Chapter
A 1,000-year-old RNA virus
Peyambari, M., Warner, S., Stoler, N., Rainer, D. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 1, e01188-18.Research output: Contribution to journal › Article
Online aerobiology process model
Russo, J. M. & Isard, S. A., Jan 1 2011, GIS Applications in Agriculture: Volume Three: Invasive Species. CRC Press, p. 159-166 8 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Survival of Lab Grown Calonectria pseudonaviculata Microsclerotia During Small-Scale Composting
Harvey, R. J., Davis, D. D., Shishkoff, N. & Pecchia, J. A., Jan 2 2019, In : Compost Science and Utilization. 27, 1, p. 24-34 11 p.Research output: Contribution to journal › Article
Whole-genome comparisons of Penicillium spp. Reveals secondary metabolic gene clusters and candidate genes associated with fungal aggressiveness during apple fruit decay
Wu, G., Jurick, W. M., Lichtner, F. J., Peng, H., Yin, G., Gaskins, V. L., Yin, Y., Hua, S. S., Peter, K. A. & Bennett, J. W., Jan 1 2019, In : PeerJ. 2019, 1, e6170.Research output: Contribution to journal › Article
Exploring oyster mushroom (Pleurotus ostreatus) substrate preparation by varying phase I composting time: changes in bacterial communities and physicochemical composition of biomass impacting mushroom yields
Vieira, F. R., Pecchia, J. A., Segato, F. & Polikarpov, I., Mar 1 2019, In : Journal of Applied Microbiology. 126, 3, p. 931-944 14 p.Research output: Contribution to journal › Article
The Inherent Conflicts in Developing Soil Microbial Inoculants
Kaminsky, L. M., Trexler, R. V., Malik, R. J., Hockett, K. & Bell, T., Feb 1 2019, In : Trends in Biotechnology. 37, 2, p. 140-151 12 p.Research output: Contribution to journal › Review article
Multiplexed Interactions. Viruses of Endophytic Fungi.
Bao, X. & Roossinck, M. J., Jan 1 2013, Advances in Virus Research. Academic Press Inc., p. 37-58 22 p. (Advances in Virus Research; vol. 86).Research output: Chapter in Book/Report/Conference proceeding › Chapter
CRISPR-PLANT v2: an online resource for highly specific guide RNA spacers based on improved off-target analysis
Minkenberg, B., Zhang, J., Xie, K. & Yang, Y., Jan 1 2019, In : Plant Biotechnology Journal. 17, 1, p. 5-8 4 p.Research output: Contribution to journal › Letter
Localized recombination drives diversification of killing spectra for phage-derived syringacins
Baltrus, D. A., Clark, M., Smith, C. & Hockett, K., Feb 1 2019, In : ISME Journal. 13, 2, p. 237-249 13 p.Research output: Contribution to journal › Article
The role of citizen science in addressing grand challenges in food and agriculture research
Ryan, S. F., Adamson, N. L., Aktipis, A., Andersen, L. K., Austin, R., Barnes, L., Beasley, M. R., Bedell, K. D., Briggs, S., Chapman, B., Cooper, C. B., Corn, J. O., Creamer, N. G., Delborne, J. A., Domenico, P., Driscoll, E., Goodwin, J., Hjarding, A., Hulbert, J. M., Isard, S. A. & 22 others, , Nov 21 2018, In : Proceedings of the Royal Society B: Biological Sciences. 285, 1891, 20181977.Research output: Contribution to journal › Review article
New records of rust disease caused by Uromyces halstedii in North America
Davis, D. D., Harvey, R. J. & Aime, M. C., Jan 1 2018, In : Plant disease. 102, 11, 1 p.Research output: Contribution to journal › Comment/debate
Soybean yield loss estimates due to diseases in the United States and Ontario, Canada, from 2010 to 2014
Allen, T. W., Bradley, C. A., Sisson, A. J., Byamukama, E., Chilvers, M. I., Coker, C. M., Collins, A. A., Damicone, J. P., Dorrance, A. E., Dufault, N. S., Esker, P., Faske, T. R., Giesler, L. J., Grybauskas, A. P., Hershman, D. E., Hollier, C. A., Isakeit, T., Jardine, D. J., Kelly, H. M., Kemerait, R. C. & 23 others, , Jan 1 2017, In : Plant Health Progress. 18, 1, p. 19-27 9 p.Research output: Contribution to journal › Article
Evaluating the profitability of foliar fungicide programs in mid-atlantic soft-red winter wheat production
Sylvester, P. N., Lana, F. D., Mehl, H. L., Collins, A. A., Paul, P. A. & Kleczewski, N. M., Aug 1 2018, In : Plant disease. 102, 8, p. 1627-1637 11 p.Research output: Contribution to journal › Article
Corn yield loss estimates due to diseases in the United States and Ontario, Canada from 2012 to 2015
Mueller, D. S., Wise, K. A., Sisson, A. J., Allen, T. W., Bergstrom, G. C., Bosley, D. B., Bradley, C. A., Broders, K. D., Byamukama, E., Chilvers, M. I., Collins, A. A., Faske, T. R., Friskop, A. J., Heiniger, R. W., Hollier, C. A., Hooker, D. C., Isakeit, T., Jackson-Ziems, T. A., Jardine, D. J., Kelly, H. M. & 13 others, , Jan 1 2016, In : Plant Health Progress. 17, 3, p. 211-222 12 p.Research output: Contribution to journal › Article
Meta-Analysis of the Effects of QoI and DMI Fungicide Combinations on Fusarium Head Blight and Deoxynivalenol in Wheat
Paul, P. A., Bradley, C. A., Madden, L. V., Lana, F. D., Bergstrom, G. C., Dill-Macky, R., Esker, P., Wise, K. A., McMullen, M., Grybauskas, A., Kirk, W. W., Milus, E. & Ruden, K., Dec 1 2018, In : Plant disease. 102, 12, p. 2602-2615 14 p.Research output: Contribution to journal › Article
Rethinking Invasion Impacts across Multiple Field Sites Using European Swallowwort (Vincetoxicum rossicum) as a Model Invader
Thompson, G. L., Bell, T. & Kao-Kniffin, J., Sep 1 2018, In : Invasive Plant Science and Management. 11, 3, p. 109-116 8 p.Research output: Contribution to journal › Article
Effects of Pre- and Postanthesis Applications of Demethylation Inhibitor Fungicides on Fusarium Head Blight and Deoxynivalenol in Spring and Winter Wheat
Paul, P. A., Bradley, C. A., Madden, L. V., Dalla Lana, F., Bergstrom, G. C., Dill-Macky, R., Wise, K. A., Esker, P., McMullen, M., Grybauskas, A., Kirk, W. W., Milus, E. & Ruden, K., Dec 1 2018, In : Plant disease. 102, 12, p. 2500-2510 11 p.Research output: Contribution to journal › Article
Defense signaling and pathway interactions involved in rice disease resistance
Zhou, X., Bailey, T. & Yang, Y., Jan 1 2006, Model Plants and Crop Improvement. CRC Press, p. 207-225 19 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Environmental and Management Factors Associated with Bacterial Diseases of Onion in Pennsylvania
Pfeufer, E. E. & Gugino, B. K., Nov 1 2018, In : Plant disease. 102, 11, p. 2205-2211 7 p.Research output: Contribution to journal › Article
Large-scale synonymous substitutions in cucumber mosaic virus RNA 3 facilitate amino acid mutations in the coat protein
Mochizuki, T., Ohara, R. & Roossinck, M. J., Nov 1 2018, In : Journal of virology. 92, 22, e01007-18.Research output: Contribution to journal › Article