Recent Publications (Research)

Evolution of the Genes Encoding Effector Candidates Within Multiple Pathotypes of Magnaporthe oryzae

Kim, K. T., Ko, J., Song, H., Choi, G., Kim, H., Jeon, J., Cheong, K., Kang, S. & Lee, Y. H., Nov 6 2019, In : Frontiers in Microbiology. 10, 2575.

Research output: Contribution to journal › Article

Physicochemical characterization of composts for the cultivation of Pleurotus ostreatus

Zanon, A. R., De Jesus, J. P. F., Vieira, F. R., Martins, O. G. & De Andrade, M. C. N., Jan 1 2019, In : Revista em Agronegocio e Meio Ambiente. 12, 3, p. 1167-1181 15 p.

Research output: Contribution to journal › Article

Genetic analysis of resistance to bacterial leaf spot in the heirloom lettuce cultivar Reine des Glaces

Sandoya, G. V., Maisonneuve, B., Truco, M. J., Bull, C. T., Simko, I., Trent, M., Hayes, R. J. & Michelmore, R. W., Dec 1 2019, In : Molecular Breeding. 39, 12, 160.

Research output: Contribution to journal › Article

Parasitic Wasp Mediates Plant Perception of Insect Herbivores

Tan, C. W., Peiffer, M., Hoover, K., Rosa, C. & Felton, G. W., Dec 1 2019, In : Journal of Chemical Ecology. 45, 11-12, p. 972-981 10 p.

Research output: Contribution to journal › Article

Effects of straw, sawdust and sand bedding on dairy manure composting

Michel, F. C., Keener, H. M., Rigot, J., Wilkinson, T. & Pecchia, J., Dec 1 2004, p. 4669-4682. 14 p.

Research output: Contribution to conference › Paper

100 Years Since Tolaas: Bacterial Blotch of Mushrooms in the 21^st Century

Osdaghi, E., Martins, S. J., Ramos-Sepulveda, L., Vieira, F. R., Pecchia, J. A., Beyer, D. M., Bell, T. H., Yang, Y., Hockett, K. L. & Bull, C. T., Nov 1 2019, In : Plant disease. 103, 11, p. 2714-2732 19 p.

Research output: Contribution to journal › Review article

Vertical distribution of aphids (Homoptera: Aphididae) in the planetary boundary layer

Isard, S. A., Irwin, M. E. & Hollinger, S. E., Dec 1 1990, In : Environmental Entomology. 19, 6, p. 1473-1484 12 p.

Research output: Contribution to journal › Article

Three novel Ambrosia Fusarium Clade species producing clavate macroconidia known (F. floridanum and F. obliquiseptatum) or predicted (F. tuaranense) to be farmed by Euwallacea spp. (Coleoptera: Scolytinae) on woody hosts

Aoki, T., Smith, J. A., Kasson, M. T., Freeman, S., Geiser, D. M., Geering, A. D. W. & O’Donnell, K., Nov 2 2019, In : Mycologia. 111, 6, p. 919-935 17 p.

Research output: Contribution to journal › Article

Development of a mushroom harvesting assistance system using computer vision

Lee, C. H., Choi, D., Pecchia, J., He, L. & Heinemann, P., Jan 1 2019.

Research output: Contribution to conference › Paper

Perennial ryegrass wear resistance and soil amendment by Ca- And Mg-silicates

Pruyne, D. T., Schlossberg, M. J. & Uddin, W., Sep 25 2019, In : Agronomy. 9, 10, 578.

Research output: Contribution to journal › Article

Comparative analysis uncovers the limitations of current molecular detection methods for Fusarium oxysporum f. Sp. Cubense Race 4 strains

Magdama, F., Monserrate-Maggi, L., Serrano, L., Sosa, D., Geiser, D. M. & Jiménez-Gasco, M. D. M., Jan 1 2019, In : PloS one. 14, 9, e0222727.

Research output: Contribution to journal › Article

Viruses in the phytobiome

Roossinck, M. J., Aug 1 2019, In : Current Opinion in Virology. 37, p. 72-76 5 p.

Research output: Contribution to journal › Review article

Predicting CRISPR/Cas9-Induced Mutations for Precise Genome Editing

Molla, K. A. & Yang, Y., Jan 1 2019, (Accepted/In press) In : Trends in Biotechnology.

Research output: Contribution to journal › Short survey

Neonicotinoid seed treatments of soybean provide negligible benefits to US farmers

Mourtzinis, S., Krupke, C. H., Esker, P. D., Varenhorst, A., Arneson, N. J., Bradley, C. A., Byrne, A. M., Chilvers, M. I., Giesler, L. J., Herbert, A., Kandel, Y. R., Kazula, M. J., Hunt, C., Lindsey, L. E., Malone, S., Mueller, D. S., Naeve, S., Nafziger, E., Reisig, D. D., Ross, W. J. & 3 others, Rossman, D. R., Taylor, S. & Conley, S. P., Dec 1 2019, In : Scientific reports. 9, 1, 11207.

Research output: Contribution to journal › Article

Medicago sativa has reduced biomass and nodulation when grown with soil microbiomes conditioned to high phosphorus inputs

Kaminsky, L. M., Thompson, G. L., Trexler, R. V., Bell, T. H. & Kao-Kniffin, J., Jan 1 2018, In : Phytobiomes Journal. 2, 4, p. 237-248 12 p.

Research output: Contribution to journal › Article

Root cortical anatomy is associated with differential pathogenic and symbiotic fungal colonization in maize

Galindo-Castañeda, T., Brown, K. M., Kuldau, G. A., Roth, G. W., Wenner, N. G., Ray, S., Schneider, H. & Lynch, J. P., Nov 1 2019, In : Plant Cell and Environment. 42, 11, p. 2999-3014 16 p.

Research output: Contribution to journal › Article

Effects of isolates of Clarireedia jacksonii and Clarireedia monteithiana on severity of dollar spot in turfgrasses by host type

Aynardi, B. A., Jimenez Gasco, M. D. M. & Uddin, W., Nov 1 2019, In : European Journal of Plant Pathology. 155, 3, p. 817-829 13 p.

Research output: Contribution to journal › Article

Erwinia amylovora auxotrophic mutant exometabolomics and virulence on apples

Klee, S. M., Sinn, J. P., Finley, M., Allman, E. L., Smith, P. B., Aimufua, O., Sitther, V., Lehman, B. L., Krawczyk, T., Peter, K. A. & McNellis, T. W., Jan 1 2019, In : Applied and environmental microbiology. 85, 15, e00935-19.

Research output: Contribution to journal › Article

Mushroom sciarid fly, Lycoriella ingenua (Diptera: Sciaridae) adults and larvae vector Mushroom Green Mold (Trichoderma aggressivum ft. aggressivum) spores

Mazin, M., Harvey, R., Andreadis, S., Pecchia, J. A., Cloonan, K. & Rajotte, E. G., Jan 1 2019, (Accepted/In press) In : Applied Entomology and Zoology.

Research output: Contribution to journal › Article

Optimizing fungicide timing for the management of white mold in processing snap bean in New York

Pethybridge, S. J., Gugino, B. K. & Kikkert, J. R., Nov 1 2019, In : Crop Protection. 125, 104883.

Research output: Contribution to journal › Article

Corrigendum: Inference of convergent gene acquisition among pseudomonas syringae strains isolated from watermelon, cantaloupe, and squash (Frontiers in Microbiology (2019) 10 (270) DOI: 10.3389/fmicb.2019.00270)

Newberry, E. A., Ebrahim, M., Timilsina, S., Zlatković, N., Obradoví, A., Bull, C. T., Goss, E. M., Huguet-Tapia, J. C., Paret, M. L., Jones, J. B. & Potnis, N., Jan 1 2019, In : Frontiers in Microbiology. 10, MAY, 00963.

Research output: Contribution to journal › Comment/debate

Efficacy of Double Nickel LC (Bacillus amyloliquefaciens D747 strain) for management of white mold in snap and dry bean

Pethybridge, S. J., Gugino, B. K. & Kikkert, J. R., Jan 1 2019, In : Plant Health Progress. 20, 1, p. 61-66 6 p.

Research output: Contribution to journal › Article

Determinants of coinfection in the mycoviruses

Thapa, V. & Roossinck, M. J., Jan 1 2019, In : Frontiers in Cellular and Infection Microbiology. 9, MAY, 169.

Research output: Contribution to journal › Comment/debate

Disruption and Overexpression of the Gene Encoding ACC (1-Aminocyclopropane-1-Carboxylic Acid) Deaminase in Soil-Borne Fungal Pathogen Verticillium dahliae Revealed the Role of ACC as a Potential Regulator of Virulence and Plant Defense

Tsolakidou, M. D., Pantelides, I., Tzima, A. K., Kang, S., Paplomatas, E. J. & Tsaltas, D., Jun 1 2019, In : Molecular Plant-Microbe Interactions. 32, 6, p. 639-653 15 p.

Research output: Contribution to journal › Article

Impact of Ammonia During Composting on Calonectria pseudonaviculata and C. henricotiae, Causal Agents of Boxwood Blight

Harvey, R. J., Shishkoff, N., Pecchia, J. A. & Davis, D. D., Apr 3 2019, In : Compost Science and Utilization. 27, 2, p. 116-123 8 p.

Research output: Contribution to journal › Article

Unraveling the ecology and epidemiology of an emerging fungal disease, sea turtle egg fusariosis (STEF)

Smyth, C. W., Sarmiento-Ramírez, J. M., Short, D. P. G., Diéguez-Uribeondoid, J., O’donnell, K. & Geiser, D. M., May 2019, In : PLoS pathogens. 15, 5, e1007682.

Research output: Contribution to journal › Article

Host-specific symptoms and increased release of Xanthomonas citri and X.campestris pv. malvacearum from leaves are determined by the 102-bp tandem repeats of pthA and avrb6, respectively

Yang, Y., De Feyter, R. & Gabriel, D. W., Jan 1 1994, In : Molecular Plant-Microbe Interactions. 7, 3, p. 345-355 11 p.

Research output: Contribution to journal › Article

Xanthomonas avirulence/pathogenicity gene family encodes functional plant nuclear targeting signals

Yang, Y. & Gabriel, D. W., Jul 1 1995, In : Molecular Plant-Microbe Interactions. 8, 4, p. 627-631 5 p.

Research output: Contribution to journal › Article

The Bax inhibitor UvBI-1, a negative regulator of mycelial growth and conidiation, mediates stress response and is critical for pathogenicity of the rice false smut fungus Ustilaginoidea virens

Xie, S., Wang, Y., Wei, W., Li, C., Liu, Y., Qu, J., Meng, Q., Lin, Y., Yin, W., Yang, Y. & Luo, C., Oct 1 2019, In : Current Genetics. 65, 5, p. 1185-1197 13 p.

Research output: Contribution to journal › Article

Extragenic suppression of elongation factor P gene mutant phenotypes in erwinia amylovora

Klee, S. M., Sinn, J. P., Holmes, A. C., Lehman, B. L., Krawczyk, T., Peter, K. A. & McNellis, T. W., Jan 1 2019, In : Journal of bacteriology. 201, 11, e0072218.

Research output: Contribution to journal › Article

Inference of convergent gene acquisition among Pseudomonas syringae strains isolated from watermelon, cantaloupe, and squash

Newberry, E. A., Ebrahim, M., Timilsina, S., Zlatković, N., Obradović, A., Bull, C. T., Goss, E. M., Huguet-Tapia, J. C., Paret, M. L., Jones, J. B. & Potnis, N., Jan 1 2019, In : Frontiers in Microbiology. 10, FEB, 270.

Research output: Contribution to journal › Article

The apple fruitlet model system for fire blight disease

Klee, S. M., Sinn, J. P. & McNellis, T. W., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 187-198 12 p. (Methods in Molecular Biology; vol. 1991).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Manipulation of aphid behavior by a persistent plant virus

Safari, M., Ferrari, M. J. & Roossinck, M. J., May 1 2019, In : Journal of virology. 93, 9, e01781-18.

Research output: Contribution to journal › Article

Characterization of early blight resistance in potato cultivars

Xue, W., Haynes, K. G. & Qu, X., Apr 1 2019, In : Plant disease. 103, 4, p. 629-637 9 p.

Research output: Contribution to journal › Article

In Memoriam: The Career, Achievements, and Legacy of Milton Zaitlin

Palukaitis, P. & Roossinck, M. J., Jan 1 2018, Advances in Virus Research. Palukaitis, P. & Roossinck, M. J. (eds.). Academic Press Inc., p. 1-21 21 p. (Advances in Virus Research; vol. 102).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

Bell, T. H., Hockett, K., Alcalá-Briseño, R. I., Barbercheck, M., Beattie, G. A., Bruns, M. A., Carlson, J., Chung, T., Collins, A., Emmett, B., Esker, P., Garrett, K., Glenna, L., Gugino, B. K., Jimenez Gasco, M. D. M., Kinkel, L., Kovac, J., Kowalski, K., Kuldau, G., Leveau, J. & 10 others, Michalska-Smith, M., Myrick, J., Peter, K., Salazar, M. V., Shade, A., Stopnisek, N., Tan, X., Welty, A., Wickings, K. & Yergeau, E., Mar 13 2019, In : Phytobiomes Journal.

Research output: Contribution to journal › Article

Medicago sativa has Reduced Biomass and Nodulation When Grown with Soil Microbiomes Conditioned to High Phosphorus Inputs

Kaminsky, L. M., Thompson, G. L., Trexler, R. V., Bell, T. H. & Kao-Kniffin, J., Aug 30 2018, In : Phytobiomes Journal. 2, 4, p. 237-248 12 p.

Research output: Contribution to journal › Article

CRISPR/Cas-Mediated Base Editing: Technical Considerations and Practical Applications

Molla, K. A. & Yang, Y., Oct 2019, In : Trends in Biotechnology. 37, 10, p. 1121-1142 22 p.

Research output: Contribution to journal › Review article

Molecular and genetic basis of plant-fungal pathogen interactions

Kang, S. & Dobinson, K. F., Jan 1 2004, Applied Mycology and Biotechnology. C ed. Elsevier, p. 59-97 39 p. (Applied Mycology and Biotechnology; vol. 4, no. C).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Impact of cultivated hosts on the recombination of cucumber mosaic virus

Ouedraogo, R. S., Pita, J. S., Somda, I. P., Traore, O. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 7, e01770.

Research output: Contribution to journal › Article

Genetic diversity and geographic distribution of Bemisia tabaci and Trialeurodes vaporariorum in Costa Rica

Barboza, N. M., Esker, P., Inoue-Nagata, A. K. & Moriones, E., Mar 1 2019, In : Annals of Applied Biology. 174, 2, p. 248-261 14 p.

Research output: Contribution to journal › Article

The past, present, and future of barley yellow dwarf management

Walls, J., Rajotte, E. & Rosa, C., Jan 1 2019, In : Agriculture (Switzerland). 9, 1, 23.

Research output: Contribution to journal › Review article

Request for revision of the statutes of the international committee on systematics of prokaryotes

Whitman, W. B., Bull, C. T., Busse, H. J., Fournier, P. E., Oren, A. & Ventura, S., Feb 1 2019, In : International journal of systematic and evolutionary microbiology. 69, 2, p. 584-593 10 p., 003117.

Research output: Contribution to journal › Article

The global burden of pathogens and pests on major food crops

Savary, S., Willocquet, L., Pethybridge, S. J., Esker, P., McRoberts, N. & Nelson, A., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 430-439 10 p.

Research output: Contribution to journal › Article

Baseline sensitivity of penicillium spp. To difenoconazole

Jurick, W. M., Macarisin, O., Gaskins, V. L., Janisiewicz, W. J., Peter, K. A. & Cox, K. D., Feb 1 2019, In : Plant disease. 103, 2, p. 331-337 7 p.

Research output: Contribution to journal › Article

Molecular systematics of two sister clades, the Fusarium concolor and F. babinda species complexes, and the discovery of a novel microcycle macroconidium–producing species from South Africa

Jacobs-Venter, A., Laraba, I., Geiser, D. M., Busman, M., Vaughan, M. M., Proctor, R. H., McCormick, S. P. & O’Donnell, K., Nov 2 2018, In : Mycologia. 110, 6, p. 1189-1204 16 p.

Research output: Contribution to journal › Article

Genome sequence of a lethal vascular wilt fungus, verticillium nonalfalfae, a biological control used against the invasive ailanthus altissima

Kasson, M. T., Kasson, L. R., Wickert, K. L., Davis, D. D. & Stajich, J. E., Jan 24 2019, In : Microbiology Resource Announcements. 8, 4, e01619-18.

Research output: Contribution to journal › Article

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