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Recent Publications

Efficacy of Double Nickel LC (Bacillus amyloliquefaciens D747 strain) for management of white mold in snap and dry bean

Pethybridge, S. J., Gugino, B. K. & Kikkert, J. R., Jan 1 2019, In : Plant Health Progress. 20, 1, p. 61-66 6 p.

Research output: Contribution to journalArticle

Determinants of coinfection in the mycoviruses

Thapa, V. & Roossinck, M. J., Jan 1 2019, In : Frontiers in Cellular and Infection Microbiology. 9, MAY, 169.

Research output: Contribution to journalComment/debate

Impact of Ammonia During Composting on Calonectria pseudonaviculata and C. henricotiae, Causal Agents of Boxwood Blight

Harvey, R. J., Shishkoff, N., Pecchia, J. A. & Davis, D. D., Apr 3 2019, In : Compost Science and Utilization. 27, 2, p. 116-123 8 p.

Research output: Contribution to journalArticle

Unraveling the ecology and epidemiology of an emerging fungal disease, sea turtle egg fusariosis (STEF)

Smyth, C. W., Sarmiento-Ramírez, J. M., Short, D. P. G., Diéguez-Uribeondoid, J., O’donnell, K. & Geiser, D. M., May 1 2019, In : PLoS pathogens. 15, 5, e1007682.

Research output: Contribution to journalArticle

Xanthomonas avirulence/pathogenicity gene family encodes functional plant nuclear targeting signals

Yang, Y. & Gabriel, D. W., Jul 1 1995, In : Molecular Plant-Microbe Interactions. 8, 4, p. 627-631 5 p.

Research output: Contribution to journalArticle

The Bax inhibitor UvBI-1, a negative regulator of mycelial growth and conidiation, mediates stress response and is critical for pathogenicity of the rice false smut fungus Ustilaginoidea virens

Xie, S., Wang, Y., Wei, W., Li, C., Liu, Y., Qu, J., Meng, Q., Lin, Y., Yin, W., Yang, Y. & Luo, C., Jan 1 2019, In : Current Genetics.

Research output: Contribution to journalArticle

Extragenic suppression of elongation factor P gene mutant phenotypes in erwinia amylovora

Klee, S. M., Sinn, J. P., Holmes, A. C., Lehman, B. L., Krawczyk, T., Peter, K. A. & McNellis, T. W., Jan 1 2019, In : Journal of bacteriology. 201, 11, e0072218.

Research output: Contribution to journalArticle

Inference of convergent gene acquisition among Pseudomonas syringae strains isolated from watermelon, cantaloupe, and squash

Newberry, E. A., Ebrahim, M., Timilsina, S., Zlatković, N., Obradović, A., Bull, C. T., Goss, E. M., Huguet-Tapia, J. C., Paret, M. L., Jones, J. B. & Potnis, N., Jan 1 2019, In : Frontiers in Microbiology. 10, FEB, 270.

Research output: Contribution to journalArticle

The apple fruitlet model system for fire blight disease

Klee, S. M., Sinn, J. P. & McNellis, T. W., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 187-198 12 p. (Methods in Molecular Biology; vol. 1991).

Research output: Chapter in Book/Report/Conference proceedingChapter

Manipulation of aphid behavior by a persistent plant virus

Safari, M., Ferrari, M. J. & Roossinck, M. J., May 1 2019, In : Journal of virology. 93, 9, e01781-18.

Research output: Contribution to journalArticle

Characterization of early blight resistance in potato cultivars

Xue, W., Haynes, K. G. & Qu, X., Apr 1 2019, In : Plant disease. 103, 4, p. 629-637 9 p.

Research output: Contribution to journalArticle

In Memoriam: The Career, Achievements, and Legacy of Milton Zaitlin

Palukaitis, P. & Roossinck, M. J., Jan 1 2018, Advances in Virus Research. Palukaitis, P. & Roossinck, M. J. (eds.). Academic Press Inc., p. 1-21 21 p. (Advances in Virus Research; vol. 102).

Research output: Chapter in Book/Report/Conference proceedingChapter

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

Bell, T. H., Hockett, K., Alcalá-Briseño, R. I., Barbercheck, M., Beattie, G. A., Bruns, M. A., Carlson, J., Chung, T., Collins, A., Emmett, B., Esker, P., Garrett, K., Glenna, L., Gugino, B. K., Jimenez Gasco, M. D. M., Kinkel, L., Kovac, J., Kowalski, K., Kuldau, G., Leveau, J. & 10 othersMichalska-Smith, M., Myrick, J., Peter, K., Salazar, M. V., Shade, A., Stopnisek, N., Tan, X., Welty, A., Wickings, K. & Yergeau, E., Mar 13 2019, In : Phytobiomes Journal.

Research output: Contribution to journalArticle

Medicago sativa has Reduced Biomass and Nodulation When Grown with Soil Microbiomes Conditioned to High Phosphorus Inputs

Kaminsky, L. M., Thompson, G. L., Trexler, R. V., Bell, T. H. & Kao-Kniffin, J., Aug 30 2018, In : Phytobiomes Journal. 2, 4, p. 237-248 12 p.

Research output: Contribution to journalArticle

CRISPR/Cas-Mediated Base Editing: Technical Considerations and Practical Applications

Molla, K. A. & Yang, Y., Jan 1 2019, In : Trends in Biotechnology.

Research output: Contribution to journalReview article

Molecular and genetic basis of plant-fungal pathogen interactions

Kang, S. & Dobinson, K. F., Jan 1 2004, Applied Mycology and Biotechnology. C ed. Elsevier, p. 59-97 39 p. (Applied Mycology and Biotechnology; vol. 4, no. C).

Research output: Chapter in Book/Report/Conference proceedingChapter

Impact of Cultivated Hosts on the Recombination of Cucumber Mosaic Virus

Ouedraogo, R. S., Pita, J. S., Somda, I. P., Traore, O. & Roossinck, M. J., Apr 1 2019, In : Journal of virology. 93, 7

Research output: Contribution to journalArticle

Genetic diversity and geographic distribution of Bemisia tabaci and Trialeurodes vaporariorum in Costa Rica

Barboza, N. M., Esker, P., Inoue-Nagata, A. K. & Moriones, E., Mar 1 2019, In : Annals of Applied Biology. 174, 2, p. 248-261 14 p.

Research output: Contribution to journalArticle

The past, present, and future of barley yellow dwarf management

Walls, J., Rajotte, E. G. & Rosa, C., Jan 1 2019, In : Agriculture (Switzerland). 9, 1, 23.

Research output: Contribution to journalReview article

Request for revision of the statutes of the international committee on systematics of prokaryotes

Whitman, W. B., Bull, C. T., Busse, H. J., Fournier, P. E., Oren, A. & Ventura, S., Feb 1 2019, In : International journal of systematic and evolutionary microbiology. 69, 2, p. 584-593 10 p., 003117.

Research output: Contribution to journalArticle

The global burden of pathogens and pests on major food crops

Savary, S., Willocquet, L., Pethybridge, S. J., Esker, P., McRoberts, N. & Nelson, A., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 430-439 10 p.

Research output: Contribution to journalArticle

Baseline sensitivity of penicillium spp. To difenoconazole

Jurick, W. M., Macarisin, O., Gaskins, V. L., Janisiewicz, W. J., Peter, K. A. & Cox, K. D., Feb 1 2019, In : Plant disease. 103, 2, p. 331-337 7 p.

Research output: Contribution to journalArticle

Molecular systematics of two sister clades, the Fusarium concolor and F. babinda species complexes, and the discovery of a novel microcycle macroconidium–producing species from South Africa

Jacobs-Venter, A., Laraba, I., Geiser, D. M., Busman, M., Vaughan, M. M., Proctor, R. H., McCormick, S. P. & O’Donnell, K., Nov 2 2018, In : Mycologia. 110, 6, p. 1189-1204 16 p.

Research output: Contribution to journalArticle

Genome sequence of a lethal vascular wilt fungus, verticillium nonalfalfae, a biological control used against the invasive ailanthus altissima

Kasson, M. T., Kasson, L. R., Wickert, K. L., Davis, D. D. & Stajich, J. E., Jan 24 2019, In : Microbiology Resource Announcements. 8, 4, e01619-18.

Research output: Contribution to journalArticle

Marasas et al. 1984 “Toxigenic Fusarium Species: Identity and Mycotoxicology” revisited

O’Donnell, K., McCormick, S. P., Busman, M., Proctor, R. H., Ward, T. J., Doehring, G., Geiser, D. M., Alberts, J. F. & Rheeder, J. P., Nov 2 2018, In : Mycologia. 110, 6, p. 1058-1080 23 p.

Research output: Contribution to journalArticle

A multiplexed CRISPR/cas9 editing system based on the endogenous tRNA processing

Xie, K. & Yang, Y., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 63-73 11 p. (Methods in Molecular Biology; vol. 1917).

Research output: Chapter in Book/Report/Conference proceedingChapter

A 1,000-year-old RNA virus

Peyambari, M., Warner, S., Stoler, N., Rainer, D. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 1, e01188-18.

Research output: Contribution to journalArticle

Online aerobiology process model

Russo, J. M. & Isard, S. A., Jan 1 2011, GIS Applications in Agriculture: Volume Three: Invasive Species. CRC Press, p. 159-166 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Survival of Lab Grown Calonectria pseudonaviculata Microsclerotia During Small-Scale Composting

Harvey, R. J., Davis, D. D., Shishkoff, N. & Pecchia, J. A., Jan 2 2019, In : Compost Science and Utilization. 27, 1, p. 24-34 11 p.

Research output: Contribution to journalArticle

Whole-genome comparisons of Penicillium spp. Reveals secondary metabolic gene clusters and candidate genes associated with fungal aggressiveness during apple fruit decay

Wu, G., Jurick, W. M., Lichtner, F. J., Peng, H., Yin, G., Gaskins, V. L., Yin, Y., Hua, S. S., Peter, K. A. & Bennett, J. W., Jan 1 2019, In : PeerJ. 2019, 1, e6170.

Research output: Contribution to journalArticle

The Inherent Conflicts in Developing Soil Microbial Inoculants

Kaminsky, L. M., Trexler, R. V., Malik, R. J., Hockett, K. & Bell, T., Feb 1 2019, In : Trends in Biotechnology. 37, 2, p. 140-151 12 p.

Research output: Contribution to journalReview article

Multiplexed Interactions. Viruses of Endophytic Fungi.

Bao, X. & Roossinck, M. J., Jan 1 2013, Advances in Virus Research. Academic Press Inc., p. 37-58 22 p. (Advances in Virus Research; vol. 86).

Research output: Chapter in Book/Report/Conference proceedingChapter

CRISPR-PLANT v2: an online resource for highly specific guide RNA spacers based on improved off-target analysis

Minkenberg, B., Zhang, J., Xie, K. & Yang, Y., Jan 1 2019, In : Plant Biotechnology Journal. 17, 1, p. 5-8 4 p.

Research output: Contribution to journalLetter

Localized recombination drives diversification of killing spectra for phage-derived syringacins

Baltrus, D. A., Clark, M., Smith, C. & Hockett, K., Feb 1 2019, In : ISME Journal. 13, 2, p. 237-249 13 p.

Research output: Contribution to journalArticle

The role of citizen science in addressing grand challenges in food and agriculture research

Ryan, S. F., Adamson, N. L., Aktipis, A., Andersen, L. K., Austin, R., Barnes, L., Beasley, M. R., Bedell, K. D., Briggs, S., Chapman, B., Cooper, C. B., Corn, J. O., Creamer, N. G., Delborne, J. A., Domenico, P., Driscoll, E., Goodwin, J., Hjarding, A., Hulbert, J. M., Isard, S. A. & 22 othersJust, M. G., Kar Gupta, K., Lopez-Uribe, M. M., O’Sullivan, J., Landis, E. A., Madden, A. A., McKenney, E. A., Nichols, L. M., Reading, B. J., Russell, S., Sengupta, N., Shapiro, L. R., Shell, L. K., Sheard, J. K., Shoemaker, D. D., Sorger, D. M., Starling, C., Thakur, S., Vatsavai, R. R., Weinstein, M., Winfrey, P. & Dunn, R. R., Nov 21 2018, In : Proceedings of the Royal Society B: Biological Sciences. 285, 1891, 20181977.

Research output: Contribution to journalReview article

New records of rust disease caused by Uromyces halstedii in North America

Davis, D. D., Harvey, R. J. & Aime, M. C., Jan 1 2018, In : Plant disease. 102, 11, 1 p.

Research output: Contribution to journalComment/debate

Soybean yield loss estimates due to diseases in the United States and Ontario, Canada, from 2010 to 2014

Allen, T. W., Bradley, C. A., Sisson, A. J., Byamukama, E., Chilvers, M. I., Coker, C. M., Collins, A. A., Damicone, J. P., Dorrance, A. E., Dufault, N. S., Esker, P., Faske, T. R., Giesler, L. J., Grybauskas, A. P., Hershman, D. E., Hollier, C. A., Isakeit, T., Jardine, D. J., Kelly, H. M., Kemerait, R. C. & 23 othersKleczewski, N. M., Koenning, S. R., Kurle, J. E., Malvick, D. K., Markell, S. G., Mehl, H. L., Mueller, D. S., Mueller, J. D., Mulrooney, R. P., Nelson, B. D., Newman, M. A., Osborne, L., Overstreet, C., Padgett, G. B., Phipps, P. M., Price, P. P., Sikora, E. J., Smith, D. L., Spurlock, T. N., Tande, C. A., Tenuta, A. U., A.Wise, K. & Allen Wrather, J., Jan 1 2017, In : Plant Health Progress. 18, 1, p. 19-27 9 p.

Research output: Contribution to journalArticle

Evaluating the profitability of foliar fungicide programs in mid-atlantic soft-red winter wheat production

Sylvester, P. N., Lana, F. D., Mehl, H. L., Collins, A. A., Paul, P. A. & Kleczewski, N. M., Aug 1 2018, In : Plant disease. 102, 8, p. 1627-1637 11 p.

Research output: Contribution to journalArticle

Corn yield loss estimates due to diseases in the United States and Ontario, Canada from 2012 to 2015

Mueller, D. S., Wise, K. A., Sisson, A. J., Allen, T. W., Bergstrom, G. C., Bosley, D. B., Bradley, C. A., Broders, K. D., Byamukama, E., Chilvers, M. I., Collins, A. A., Faske, T. R., Friskop, A. J., Heiniger, R. W., Hollier, C. A., Hooker, D. C., Isakeit, T., Jackson-Ziems, T. A., Jardine, D. J., Kelly, H. M. & 13 othersKinzer, K., Koenning, S. R., Malvick, D. K., McMullen, M., Meyer, R. F., Paul, P. A., Robertson, A. E., Roth, G. W., Smith, D. L., Tande, C. A., Tenuta, A. U., Vincelli, P. & Warner, F., Jan 1 2016, In : Plant Health Progress. 17, 3, p. 211-222 12 p.

Research output: Contribution to journalArticle

Meta-Analysis of the Effects of QoI and DMI Fungicide Combinations on Fusarium Head Blight and Deoxynivalenol in Wheat

Paul, P. A., Bradley, C. A., Madden, L. V., Lana, F. D., Bergstrom, G. C., Dill-Macky, R., Esker, P., Wise, K. A., McMullen, M., Grybauskas, A., Kirk, W. W., Milus, E. & Ruden, K., Dec 1 2018, In : Plant disease. 102, 12, p. 2602-2615 14 p.

Research output: Contribution to journalArticle

Rethinking Invasion Impacts across Multiple Field Sites Using European Swallowwort (Vincetoxicum rossicum) as a Model Invader

Thompson, G. L., Bell, T. & Kao-Kniffin, J., Sep 1 2018, In : Invasive Plant Science and Management. 11, 3, p. 109-116 8 p.

Research output: Contribution to journalArticle

Effects of Pre- and Postanthesis Applications of Demethylation Inhibitor Fungicides on Fusarium Head Blight and Deoxynivalenol in Spring and Winter Wheat

Paul, P. A., Bradley, C. A., Madden, L. V., Dalla Lana, F., Bergstrom, G. C., Dill-Macky, R., Wise, K. A., Esker, P., McMullen, M., Grybauskas, A., Kirk, W. W., Milus, E. & Ruden, K., Dec 1 2018, In : Plant disease. 102, 12, p. 2500-2510 11 p.

Research output: Contribution to journalArticle

Defense signaling and pathway interactions involved in rice disease resistance

Zhou, X., Bailey, T. & Yang, Y., Jan 1 2006, Model Plants and Crop Improvement. CRC Press, p. 207-225 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Environmental and Management Factors Associated with Bacterial Diseases of Onion in Pennsylvania

Pfeufer, E. E. & Gugino, B. K., Nov 1 2018, In : Plant disease. 102, 11, p. 2205-2211 7 p.

Research output: Contribution to journalArticle

Large-scale synonymous substitutions in cucumber mosaic virus RNA 3 facilitate amino acid mutations in the coat protein

Mochizuki, T., Ohara, R. & Roossinck, M. J., Nov 1 2018, In : Journal of virology. 92, 22, e01007-18.

Research output: Contribution to journalArticle

First report of fusarium stem canker on pyrularia pubera, a rare native parasitic shrub in forests of southwestern Pennsylvania

Wickert, K. L., Metheny, A. M., Davis, D. D., Geiser, D. M., Wenzel, J. W., Planinsek, D. & Kasson, M. T., Sep 1 2018, In : Plant disease. 102, 9, 1 p.

Research output: Contribution to journalComment/debate

Scout, snap, and share: First impressions of plant disease monitoring using social media

Mueller, D. S., Sisson, A. J., Kempker, R., Isard, S. A., Raymond, C., Gennett, A. J., Sheffer, W. & Bradley, C. A., Sep 1 2018, In : Plant disease. 102, 9, p. 1681-1686 6 p.

Research output: Contribution to journalArticle