Recent Publications
Perennial ryegrass wear resistance and soil amendment by Ca- And Mg-silicates
Pruyne, D. T., Schlossberg, M. J. & Uddin, W., Sep 25 2019, In : Agronomy. 9, 10, 578.Research output: Contribution to journal › Article
Comparative analysis uncovers the limitations of current molecular detection methods for Fusarium oxysporum f. Sp. Cubense Race 4 strains
Magdama, F., Monserrate-Maggi, L., Serrano, L., Sosa, D., Geiser, D. M. & Jimenez Gasco, M. D. M., Jan 1 2019, In : PloS one. 14, 9, e0222727.Research output: Contribution to journal › Article
Viruses in the phytobiome
Roossinck, M. J., Aug 1 2019, In : Current Opinion in Virology. 37, p. 72-76 5 p.Research output: Contribution to journal › Review article
Predicting CRISPR/Cas9-Induced Mutations for Precise Genome Editing
Molla, K. A. & Yang, Y., Jan 1 2019, (Accepted/In press) In : Trends in Biotechnology.Research output: Contribution to journal › Short survey
Neonicotinoid seed treatments of soybean provide negligible benefits to US farmers
Mourtzinis, S., Krupke, C. H., Esker, P., Varenhorst, A., Arneson, N. J., Bradley, C. A., Byrne, A. M., Chilvers, M. I., Giesler, L. J., Herbert, A., Kandel, Y. R., Kazula, M. J., Hunt, C., Lindsey, L. E., Malone, S., Mueller, D. S., Naeve, S., Nafziger, E., Reisig, D. D., Ross, W. J. & 3 others, , Dec 1 2019, In : Scientific reports. 9, 1, 11207.Research output: Contribution to journal › Article
Medicago sativa has reduced biomass and nodulation when grown with soil microbiomes conditioned to high phosphorus inputs
Kaminsky, L. M., Thompson, G. L., Trexler, R. V., Bell, T. & Kao-Kniffin, J., Jan 1 2018, In : Phytobiomes Journal. 2, 4, p. 237-248 12 p.Research output: Contribution to journal › Article
Root cortical anatomy is associated with differential pathogenic and symbiotic fungal colonization in maize
Galindo-Castañeda, T., Brown, K. M., Kuldau, G. A., Roth, G. W., Wenner, N. G., Ray, S., Schneider, H. & Lynch, J. P., Nov 1 2019, In : Plant Cell and Environment. 42, 11, p. 2999-3014 16 p.Research output: Contribution to journal › Article
Effects of isolates of Clarireedia jacksonii and Clarireedia monteithiana on severity of dollar spot in turfgrasses by host type
Aynardi, B. A., Jimenez Gasco, M. D. M. & Uddin, W., Nov 1 2019, In : European Journal of Plant Pathology. 155, 3, p. 817-829 13 p.Research output: Contribution to journal › Article
Erwinia amylovora auxotrophic mutant exometabolomics and virulence on apples
Klee, S. M., Sinn, J. P., Finley, M., Allman, E. L., Smith, P. B., Aimufua, O., Sitther, V., Lehman, B. L., Krawczyk, T., Peter, K. A. & McNellis, T. W., Jan 1 2019, In : Applied and environmental microbiology. 85, 15, e00935-19.Research output: Contribution to journal › Article
Mushroom sciarid fly, Lycoriella ingenua (Diptera: Sciaridae) adults and larvae vector Mushroom Green Mold (Trichoderma aggressivum ft. aggressivum) spores
Mazin, M., Harvey, R., Andreadis, S., Pecchia, J. A., Cloonan, K. & Rajotte, E. G., Jan 1 2019, (Accepted/In press) In : Applied Entomology and Zoology.Research output: Contribution to journal › Article
Optimizing fungicide timing for the management of white mold in processing snap bean in New York
Pethybridge, S. J., Gugino, B. K. & Kikkert, J. R., Nov 1 2019, In : Crop Protection. 125, 104883.Research output: Contribution to journal › Article
Corrigendum: Inference of convergent gene acquisition among pseudomonas syringae strains isolated from watermelon, cantaloupe, and squash (Frontiers in Microbiology (2019) 10 (270) DOI: 10.3389/fmicb.2019.00270)
Newberry, E. A., Ebrahim, M., Timilsina, S., Zlatković, N., Obradoví, A., Bull, C. T., Goss, E. M., Huguet-Tapia, J. C., Paret, M. L., Jones, J. B. & Potnis, N., Jan 1 2019, In : Frontiers in Microbiology. 10, MAY, 00963.Research output: Contribution to journal › Comment/debate
Efficacy of Double Nickel LC (Bacillus amyloliquefaciens D747 strain) for management of white mold in snap and dry bean
Pethybridge, S. J., Gugino, B. K. & Kikkert, J. R., Jan 1 2019, In : Plant Health Progress. 20, 1, p. 61-66 6 p.Research output: Contribution to journal › Article
Determinants of coinfection in the mycoviruses
Thapa, V. & Roossinck, M. J., Jan 1 2019, In : Frontiers in Cellular and Infection Microbiology. 9, MAY, 169.Research output: Contribution to journal › Comment/debate
Disruption and Overexpression of the Gene Encoding ACC (1-Aminocyclopropane-1-Carboxylic Acid) Deaminase in Soil-Borne Fungal Pathogen Verticillium dahliae Revealed the Role of ACC as a Potential Regulator of Virulence and Plant Defense
Tsolakidou, M. D., Pantelides, I., Tzima, A. K., Kang, S., Paplomatas, E. J. & Tsaltas, D., Jun 1 2019, In : Molecular Plant-Microbe Interactions. 32, 6, p. 639-653 15 p.Research output: Contribution to journal › Article
Impact of Ammonia During Composting on Calonectria pseudonaviculata and C. henricotiae, Causal Agents of Boxwood Blight
Harvey, R. J., Shishkoff, N., Pecchia, J. A. & Davis, D. D., Apr 3 2019, In : Compost Science and Utilization. 27, 2, p. 116-123 8 p.Research output: Contribution to journal › Article
Unraveling the ecology and epidemiology of an emerging fungal disease, sea turtle egg fusariosis (STEF)
Smyth, C. W., Sarmiento-Ramírez, J. M., Short, D. P. G., Diéguez-Uribeondoid, J., O’donnell, K. & Geiser, D. M., May 1 2019, In : PLoS pathogens. 15, 5, e1007682.Research output: Contribution to journal › Article
Host-specific symptoms and increased release of Xanthomonas citri and X.campestris pv. malvacearum from leaves are determined by the 102-bp tandem repeats of pthA and avrb6, respectively
Yang, Y., De Feyter, R. & Gabriel, D. W., Jan 1 1994, In : Molecular Plant-Microbe Interactions. 7, 3, p. 345-355 11 p.Research output: Contribution to journal › Article
Xanthomonas avirulence/pathogenicity gene family encodes functional plant nuclear targeting signals
Yang, Y. & Gabriel, D. W., Jul 1 1995, In : Molecular Plant-Microbe Interactions. 8, 4, p. 627-631 5 p.Research output: Contribution to journal › Article
The Bax inhibitor UvBI-1, a negative regulator of mycelial growth and conidiation, mediates stress response and is critical for pathogenicity of the rice false smut fungus Ustilaginoidea virens
Xie, S., Wang, Y., Wei, W., Li, C., Liu, Y., Qu, J., Meng, Q., Lin, Y., Yin, W., Yang, Y. & Luo, C., Oct 1 2019, In : Current Genetics. 65, 5, p. 1185-1197 13 p.Research output: Contribution to journal › Article
Extragenic suppression of elongation factor P gene mutant phenotypes in erwinia amylovora
Klee, S. M., Sinn, J. P., Holmes, A. C., Lehman, B. L., Krawczyk, T., Peter, K. A. & McNellis, T. W., Jan 1 2019, In : Journal of bacteriology. 201, 11, e0072218.Research output: Contribution to journal › Article
Inference of convergent gene acquisition among Pseudomonas syringae strains isolated from watermelon, cantaloupe, and squash
Newberry, E. A., Ebrahim, M., Timilsina, S., Zlatković, N., Obradović, A., Bull, C. T., Goss, E. M., Huguet-Tapia, J. C., Paret, M. L., Jones, J. B. & Potnis, N., Jan 1 2019, In : Frontiers in Microbiology. 10, FEB, 270.Research output: Contribution to journal › Article
The apple fruitlet model system for fire blight disease
Klee, S. M., Sinn, J. P. & McNellis, T. W., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 187-198 12 p. (Methods in Molecular Biology; vol. 1991).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Manipulation of aphid behavior by a persistent plant virus
Safari, M., Ferrari, M. J. & Roossinck, M. J., May 1 2019, In : Journal of virology. 93, 9, e01781-18.Research output: Contribution to journal › Article
Characterization of early blight resistance in potato cultivars
Xue, W., Haynes, K. G. & Qu, X., Apr 1 2019, In : Plant disease. 103, 4, p. 629-637 9 p.Research output: Contribution to journal › Article
In Memoriam: The Career, Achievements, and Legacy of Milton Zaitlin
Palukaitis, P. & Roossinck, M. J., Jan 1 2018, Advances in Virus Research. Palukaitis, P. & Roossinck, M. J. (eds.). Academic Press Inc., p. 1-21 21 p. (Advances in Virus Research; vol. 102).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities
Bell, T. H., Hockett, K., Alcalá-Briseño, R. I., Barbercheck, M., Beattie, G. A., Bruns, M. A., Carlson, J., Chung, T., Collins, A., Emmett, B., Esker, P., Garrett, K., Glenna, L., Gugino, B. K., Jimenez Gasco, M. D. M., Kinkel, L., Kovac, J., Kowalski, K., Kuldau, G., Leveau, J. & 10 others, , Mar 13 2019, In : Phytobiomes Journal.Research output: Contribution to journal › Article
Medicago sativa has Reduced Biomass and Nodulation When Grown with Soil Microbiomes Conditioned to High Phosphorus Inputs
Kaminsky, L. M., Thompson, G. L., Trexler, R. V., Bell, T. H. & Kao-Kniffin, J., Aug 30 2018, In : Phytobiomes Journal. 2, 4, p. 237-248 12 p.Research output: Contribution to journal › Article
CRISPR/Cas-Mediated Base Editing: Technical Considerations and Practical Applications
Molla, K. A. & Yang, Y., Oct 1 2019, In : Trends in Biotechnology. 37, 10, p. 1121-1142 22 p.Research output: Contribution to journal › Review article
Molecular and genetic basis of plant-fungal pathogen interactions
Kang, S. & Dobinson, K. F., Jan 1 2004, Applied Mycology and Biotechnology. C ed. Elsevier, p. 59-97 39 p. (Applied Mycology and Biotechnology; vol. 4, no. C).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Impact of cultivated hosts on the recombination of cucumber mosaic virus
Ouedraogo, R. S., Pita, J. S., Somda, I. P., Traore, O. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 7, e01770.Research output: Contribution to journal › Article
Genetic diversity and geographic distribution of Bemisia tabaci and Trialeurodes vaporariorum in Costa Rica
Barboza, N. M., Esker, P., Inoue-Nagata, A. K. & Moriones, E., Mar 1 2019, In : Annals of Applied Biology. 174, 2, p. 248-261 14 p.Research output: Contribution to journal › Article
The past, present, and future of barley yellow dwarf management
Walls, J., Rajotte, E. G. & Rosa, C., Jan 1 2019, In : Agriculture (Switzerland). 9, 1, 23.Research output: Contribution to journal › Review article
Request for revision of the statutes of the international committee on systematics of prokaryotes
Whitman, W. B., Bull, C. T., Busse, H. J., Fournier, P. E., Oren, A. & Ventura, S., Feb 1 2019, In : International journal of systematic and evolutionary microbiology. 69, 2, p. 584-593 10 p., 003117.Research output: Contribution to journal › Article
The global burden of pathogens and pests on major food crops
Savary, S., Willocquet, L., Pethybridge, S. J., Esker, P., McRoberts, N. & Nelson, A., Mar 1 2019, In : Nature Ecology and Evolution. 3, 3, p. 430-439 10 p.Research output: Contribution to journal › Article
Baseline sensitivity of penicillium spp. To difenoconazole
Jurick, W. M., Macarisin, O., Gaskins, V. L., Janisiewicz, W. J., Peter, K. A. & Cox, K. D., Feb 1 2019, In : Plant disease. 103, 2, p. 331-337 7 p.Research output: Contribution to journal › Article
Molecular systematics of two sister clades, the Fusarium concolor and F. babinda species complexes, and the discovery of a novel microcycle macroconidium–producing species from South Africa
Jacobs-Venter, A., Laraba, I., Geiser, D. M., Busman, M., Vaughan, M. M., Proctor, R. H., McCormick, S. P. & O’Donnell, K., Nov 2 2018, In : Mycologia. 110, 6, p. 1189-1204 16 p.Research output: Contribution to journal › Article
Genome sequence of a lethal vascular wilt fungus, verticillium nonalfalfae, a biological control used against the invasive ailanthus altissima
Kasson, M. T., Kasson, L. R., Wickert, K. L., Davis, D. D. & Stajich, J. E., Jan 24 2019, In : Microbiology Resource Announcements. 8, 4, e01619-18.Research output: Contribution to journal › Article
Marasas et al. 1984 “Toxigenic Fusarium Species: Identity and Mycotoxicology” revisited
O’Donnell, K., McCormick, S. P., Busman, M., Proctor, R. H., Ward, T. J., Doehring, G., Geiser, D. M., Alberts, J. F. & Rheeder, J. P., Nov 2 2018, In : Mycologia. 110, 6, p. 1058-1080 23 p.Research output: Contribution to journal › Article
A multiplexed CRISPR/cas9 editing system based on the endogenous tRNA processing
Xie, K. & Yang, Y., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 63-73 11 p. (Methods in Molecular Biology; vol. 1917).Research output: Chapter in Book/Report/Conference proceeding › Chapter
A 1,000-year-old RNA virus
Peyambari, M., Warner, S., Stoler, N., Rainer, D. & Roossinck, M. J., Jan 1 2019, In : Journal of virology. 93, 1, e01188-18.Research output: Contribution to journal › Article
Online aerobiology process model
Russo, J. M. & Isard, S. A., Jan 1 2011, GIS Applications in Agriculture: Volume Three: Invasive Species. CRC Press, p. 159-166 8 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
Survival of Lab Grown Calonectria pseudonaviculata Microsclerotia During Small-Scale Composting
Harvey, R. J., Davis, D. D., Shishkoff, N. & Pecchia, J. A., Jan 2 2019, In : Compost Science and Utilization. 27, 1, p. 24-34 11 p.Research output: Contribution to journal › Article
Whole-genome comparisons of Penicillium spp. Reveals secondary metabolic gene clusters and candidate genes associated with fungal aggressiveness during apple fruit decay
Wu, G., Jurick, W. M., Lichtner, F. J., Peng, H., Yin, G., Gaskins, V. L., Yin, Y., Hua, S. S., Peter, K. A. & Bennett, J. W., Jan 1 2019, In : PeerJ. 2019, 1, e6170.Research output: Contribution to journal › Article
Exploring oyster mushroom (Pleurotus ostreatus) substrate preparation by varying phase I composting time: changes in bacterial communities and physicochemical composition of biomass impacting mushroom yields
Vieira, F. R., Pecchia, J. A., Segato, F. & Polikarpov, I., Mar 1 2019, In : Journal of Applied Microbiology. 126, 3, p. 931-944 14 p.Research output: Contribution to journal › Article
The Inherent Conflicts in Developing Soil Microbial Inoculants
Kaminsky, L. M., Trexler, R. V., Malik, R. J., Hockett, K. & Bell, T., Feb 1 2019, In : Trends in Biotechnology. 37, 2, p. 140-151 12 p.Research output: Contribution to journal › Review article
Multiplexed Interactions. Viruses of Endophytic Fungi.
Bao, X. & Roossinck, M. J., Jan 1 2013, Advances in Virus Research. Academic Press Inc., p. 37-58 22 p. (Advances in Virus Research; vol. 86).Research output: Chapter in Book/Report/Conference proceeding › Chapter
CRISPR-PLANT v2: an online resource for highly specific guide RNA spacers based on improved off-target analysis
Minkenberg, B., Zhang, J., Xie, K. & Yang, Y., Jan 1 2019, In : Plant Biotechnology Journal. 17, 1, p. 5-8 4 p.Research output: Contribution to journal › Letter
Localized recombination drives diversification of killing spectra for phage-derived syringacins
Baltrus, D. A., Clark, M., Smith, C. & Hockett, K., Feb 1 2019, In : ISME Journal. 13, 2, p. 237-249 13 p.Research output: Contribution to journal › Article
The role of citizen science in addressing grand challenges in food and agriculture research
Ryan, S. F., Adamson, N. L., Aktipis, A., Andersen, L. K., Austin, R., Barnes, L., Beasley, M. R., Bedell, K. D., Briggs, S., Chapman, B., Cooper, C. B., Corn, J. O., Creamer, N. G., Delborne, J. A., Domenico, P., Driscoll, E., Goodwin, J., Hjarding, A., Hulbert, J. M., Isard, S. A. & 22 others, , Nov 21 2018, In : Proceedings of the Royal Society B: Biological Sciences. 285, 1891, 20181977.Research output: Contribution to journal › Review article